The soybean defense response through our observations using microarray analysis

SCN:

SCN Basics


SCN Life Cycle
SCN Life cycle pictures (May require substantial loading time)

SCN Invasion (pictures! May require substantial loading time)
2 day
4 day
6 day
8 day

SCN databases
SCN gene database
SCN genes of interest
Soybean cv SCN race

Soybean Defense Response
Defense Response overview 
Thru the microscope

Thru microarrays
microarray database (SGMD)
Soybean gene database(SGMD)

Hypersensitive response
Oxidative burst
Systemic Acquired Resistance


R genes

R gene overview
Rhg mapping
Rhg1
Rhg4

Pathways
Jasmonic acid
Salicylic acid
Secondary products
Ethylene
Sucrose & Trehalose

Genes/enzymes              peroxidase  
copper amine oxidase

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Hypersensitive response and reactive oxygen species

In classical plant-pest interactions the hypersensitive response (HR) occurs very rapidly.  Therefore, in this sense, the interaction of SCN with soybean does not adhere to a classical HR, however I suspect there is an HR-like response.  There is cell death and necrosis around the SCN feeding site in SCN-resistant soybean roots at about four days after invasion.  Enzymes involved in the generation of reactive oxygen species (ROS), such as copper amine oxidase and peroxidase are elevated upon invasion.

Jasmonic acid pathway

We have an indication that phospholipase and lipoxygenase are elevated in response to SCN invasion, suggesting that jasmonic acid and derivatives are synthesized.  Thus, we suspect that downstream products induced by JA are elevated.  Certainly, gene transcripts for enzyme involved in phenylpropanoid metabolism are elevated.

Phenylpropanoid pathway

Transcripts of numerous genes encoding enzymes in phenylpropanoid synthesis are elevated, including cinnamate hydrolase, 4-coumarate coA ligase, chalcone synthase, and isoflavone reductase.

Carbohydrate

The nematode is acting as a nutrient sink, drawing off carbohydrates from the plant. Numerous transcripts are elevated for genes encoding enzymes involved in carbohydrate metabolism.  Metabolic profiles confirm this observation.

Protein synthesis and turnover

Observations through the microscope and biochemical studies indicate an increase in metabolism in the syncytium.  Transcript profiles analysis indicate an increase in transcripts of genes for rRNA proteins, ubiquitin, transcription factors, and other genes involved in transcription, translation, and protein turnover. Transcripts of some genes involved in the cell cycle are also elevated.

Other plant defense responses

Transcripts of numerous other genes related to the defense response, including proteases, are induced during SCN invasion.

Signaling

Transcripts for numerous protein kinases and GTP-binding proteins are elevated.